PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g11630.1.p
Common NameBRADI_4g11630
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 95aa    MW: 11436.8 Da    PI: 4.4979
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g11630.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1447.4e-142578154
              FAR1  1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrt 54
                      +fYn+YA e GFsvr+s+ +  + n+e + r+fvCs+eg+re++ k+++++ r+
  Bradi4g11630.1.p 25 EFYNSYALEKGFSVRISYVEWDEANEEKILRKFVCSREGSREKHMKREDRKWRK 78
                      6*****************************************999883333333 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.6E-112580IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 95 aa     Download sequence    Send to blast
MVDESIDEYL DIVERTFGNE DDGFEFYNSY ALEKGFSVRI SYVEWDEANE EKILRKFVCS  60
REGSREKHMK REDRKWRKMN YAAYMTRVEV DEIL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014751141.11e-41PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLI1IJT96e-63I1IJT9_BRADI; Uncharacterized protein
STRINGBRADI4G11630.12e-62(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2449976
Representative plantOGRP1143425